Publications
2023
G. Castillo, J.C. Mora-Diaz, M. Breuer, P. Singh, R.K. Nelli, and L. Gimenez-Lirola. Molecular mechanisms of human coronavirus NL63 infection and replication. (Virus Research 327, 199078) https://doi.org/10.1016/j.virusres.2023.199078
D.A. NuccioG, M.C. Normann, B. Chai, H. Zhou, A.J. Grippo and P. Singh. Metabolome Variation in Blood and Feces as Indicator of Social Stress in Female Prairie Voles. (Int. J. Mol. Sci. 2023, 24(2), 1677) https://doi.org/10.3390/ijms24021677
2022
R. Ray and P. Singh. Prevalence and implications of STEC in Farm and Wild Ruminants. (Pathogens 2022, 11(11), 1332) https://doi.org/10.3390/pathogens11111332
N. Medugu, M. Aworh, K. Iregbu, P. Nwajiobi-Princewill, K. Khadija Abdulraheem, D. Hull, L. Harden, P. Singh, S. Obaro, A. Egwuenu, and S. Thakur. Molecular Epidemiology of Clinical E. coli infections among patients attending a tertiary hospital in Abuja, Nigeria. (Sci Rep 12, 14822) https://doi.org/10.1038/s41598-022-19289-z
L. Spencer, B. Olawuni and P. Singh. Gut virome: Role and distribution in health and gastrointestinal diseases. (Front. Cell. Infect. Microbiol. 2022, 12)
D. Hernandez-Patlan, B. Solis-Cruz, J.D. Latorre, R. Merino-Guzman, M.M. Rodriguez, C. Ausland, X. Hernandez-Velasco, O.O. Holguin, R. Delgado, B.M. Hargis, P. Singh and G. Tellez-Isaias. Whole genome sequence and interaction analysis in the production of six enzymes from the three Bacillus strains present in a commercial direct fed microbial (Norum™) using a Bliss independence test. (Front. Vet. Sci. 2022, 9)
2021
ST. Henderson, P. Singh, D Knupp, DW Lacher, GS Abu-Ali, JT Rudrik, and SD. Manning. Variability in the Occupancy of Escherichia coli O157 Integration Sites by Shiga Toxin-Encoding Prophages. (Toxins 2021, 13(7), 433)
K. Vasco, B. Nohomovich, P. Singh, R.E. Mosci, D. Grooms, P. Bartlett, S. Rust, L. Zhang, and S.D. Manning. Characterizing the cattle gut microbiome in farms with a high and low prevalence of Shiga-toxin-producing Escherichia coli. (Microorganisms 2021, 9(8), 1737)
2020
C. Ausland, AS. Al-Ogaili, JD. Latorre, G. Tellez-Isaias, BM. Hargis, YM. Kwon, MA. Arreguin-Nava, and P. Singh. Draft genome sequence of Clostridium perfringens strain TAMU, which causes necrotic enteritis in broiler chickens. Microbiol Resour Announc 9:e01357-19. https://doi.org/10.1128/MRA.01357-19.
I. Olomu, L. Pena-Cortes, R. Long, A Vyas, O. Krichevsky, R. Luellwitz, P. Singh and M.H. Mulks. Elimination of “kitome” and “splashome” contamination results in lack of detection of a unique placental microbiome. (BMC Micro. June 2020; 20, 157)
2018
C. Gendrin, J. Vornhagen, B. Armistead, P. Singh, C. Whidbey, S. Merillat, D. Knupp, R. Parker, LM. Rogers, P. Quach, L.M Iyer, L. Aravind, and S.D. Manning, DM. Aronoff, L. Rajagopal. A non-hemolytic Group B Streptococcus strain exhibits hypervirulence. (J Infec. Dis. 2018 Mar.; 217(6):983-987)
2017
L. Degado, P. Singh, JA. Funk, JA. Moore, EM Cannell, J. Kanesfsky, SD. Manning and KT. Scribner. Intestinal Microbial Community Dynamics of White-Tailed Deer (Odocoileus virginianus) in an Agroecosystem. (Microb. Ecol. 2017: 496-506)
N. Medugu, KC. Iregbu, R. Parker, J.Plemmons, P. Singh, LI Audu, E. Efetie, HD. Davies and SD. Manning. Group B streptococcal colonization and transmission dynamics in pregnant women and their newborns in Nigeria: implications for prevention strategies (Clin Microbiol and Infec. 2017; 23(9): 673.e9-673.e16)
2016
LA Boughner* and P. Singh*. Microbial Ecology: Where are we now? (Postdoc J. 2016 Nov; 4(11): 3–17.) *Authors contributed equally.
P. Singh and SD. Manning. Impact of age and gender on the composition and abundance of intestinal microbial communities in individuals with and without enteric infections. (Ann. Epidemiol. 2016;1-6)
P. Singh, D. Aronoff, H. Dele Davies and SD. Manning. Draft genome of an invasive Streptococcus agalactiae isolate lacking pigmentation. (Genome Announc. 2016, 4(1):e00015-16. doi:10.1128/genomeA.00015-16).
W. Cha, R. Mosci, SL. Wengert, P. Singh, DW. Newton, H. Salimnia, P. Lephart, W. Khalife, LS Mansfield, JT. Rudrick and SD. Manning. Antimicrobial susceptibility profiles of human Campylobacter jejuni isolates in Michigan and the association with phylogenetic lineage and disease severity. (Frontiers in Microbiol. 2016, 7:589. doi: 10.3389/fcimb.2016.00589).
L. Galli, V. Brusa, P. Singh, A. Cataldi, SD Manning and G. Leotta. High prevalence of Escherichia coli O157:H7 clade 8 isolated from retail meat and butcher shop environment. (Infect. Genet. Evol. 2016 doi:10.1016/j.meegid.2016.08.005)
C. Venegas-Vargas, S. Henderson, A. Khare, RE. Mosci, JD. Lehnert, P. Singh, L. Ouellette, B. Norby, JA. Funk, S. Rust, P. Bartlett, D. Grooms and SD. Manning. Factors associated with Shiga toxin producing Escherichia coli shedding in dairy and beef cattle. Appl. Environ. Microbiol. 2016, doi:10.1128/AEM.00829-16 AEM.00829-16)
2015
P. Singh, T. Teal, T. Marsh, J. Tiedje, K.Jernigan, R. Mosci, A. Zell, D. Newton, H. Salimnia, P. Lephart, H. Salimnia, W. Khalife, D. Sundin, RA. Britton, JT. Rudrik, and SD. Manning. Intestinal microbial communities in patients with enteric infections and their family members. (Microbiome 2015, 3:45 doi:10.1186/s40168-015-0109-2).
P. Singh, R. Mosci, JT. Rudrik and SD. Manning. Draft genome sequence of a diarrheagenic Morganella morganii isolate (Genome Announc 2015, 3(5):e01165-15.)
P. Singh, Q. Sha, DW. Lacher, J. Del Valle, RE. Mosci, JA. Moore, KT. Scribner and SD. Manning. Characterization of enteropathogenic and Shiga toxin-producing Escherichia coli in cattle and deer in a shared agroecosystem. (Front Cell Infect Microbiol. 2015, 5:29.).
N. Amigo, E. Mercado, A. Bentancor, P. Singh, D. Vilte, E. Gerhardt, E. Zotta, C. Ibarra, SD. Manning, M. Larzabal and A.A Cataldi. Clade 8 and clade 6 strains of Escherichia coli O157:H7 from cattle in Argentina have hypervirulent-like phenotypes. (PLoS One. June1, 2015 DOI: 10.1371/journal.pone.0127710)
2014
P. Singh and SD. Manning. Molecular Characterization of Shiga toxin producing Escherichia coli. In: DNA methods in Food Safety: Molecular Typing of Foodborne and Waterborne Bacterial Pathogens. (eds O. A. Oyarzabal and S. Kathariou), John Wiley & Sons, Ltd, Chichester, UK. 2014 doi: 10.1002/9781118278666.ch12
AC. Springman, DW. Lacher, EA. Waymire, SL. Wengert, P. Singh, HD. Davies and SD. Manning. Pilus distribution among clonal lineages of group B Streptococcus: an evolutionary and clinical perspective. (BMC Microbiology.2014, 14:159 DOI: 10.1186/1471-2180-14-159)
2013
P. Singh and YM. Kwon. Comparative analysis of Campylobacter populations within individual market age broilers using fla gene typing method. (Poult Sci. 2013 92:2135-2144; doi:10.3382/ps.2012-02615)
P. Singh, A. Karimi, K. Devendra, PW. Waldroup, KK. Cho, and YM. Kwon. Influence of penicillin on microbial diversity of the cecal microbiota in broiler chickens. (Poult Sci. 2013 Jan; 92(1):272-6. doi: 10.3382/ps.2012-02603).
P. Singh, SL. Foley, R. Nayak and YM. Kwon. Massively parallel sequencing of enriched target amplicons for high-resolution genotyping of Salmonella serovars. (Mol Cell Probes. 2013 Apr; 27(2):80-5. doi: 10.1016/j.mcp.2012.11.004. Epub 2012 Nov 29).
2012
P. Singh, AC. Springman, HD. Davies and SD. Manning. Whole Genome Shotgun Sequencing of a colonizing ST17 Streptococcus agalactiae. (J Bacteriol. 2012 Nov; 194(21):6005. doi: 10.1128/JB.01378-12).
P. Singh, SL. Foley, R. Nayak and YM. Kwon. Multilocus sequence typing of Salmonella strains by high-throughput sequencing of selectively amplified target genes. (J Microbiol Methods. Jan 2012; 88 (1):127-33. Epub 2011 Nov 11).
2011
P. Singh, R. Nayak and YM Kwon. Target-enrichment through amplification of hairpin-ligated universal targets for next-generation sequencing analysis. In: Methods in molecular biology. High-throughput next generation sequencing: Methods and applications. Edited by YM Kwon and Steven C. Ricke. (Clifton, N.J.). 2011;733: 267-78.